How it works
In gradient elution each compound effectively elutes with an average retention factor k*, set by the gradient time, flow, column volume and the %B range. Linear solvent strength theory (Snyder and Dolan) gives k* = tG·F/(1.15·Vm·Δφ·S), where S describes how strongly retention depends on solvent strength: about 4 for small molecules and much larger for peptides and proteins.
Keeping k* constant is the key to transferring a gradient between columns: if the column volume or flow changes, change the gradient time in proportion. The dwell volume (mixer to column head) adds a delay before the gradient reaches the column and differs between instruments, which is a common cause of failed method transfers.
Re-equilibration of about 10 column volumes plus the dwell volume is a conservative default; confirm with replicate injections that retention times are stable.